Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetHALLMARK_DNA_REPAIR
Enrichment Score (ES)-0.47743204
Normalized Enrichment Score (NES)-1.031076
Nominal p-value0.38127092
FDR q-value0.83743435
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_DNA_REPAIR   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]594.8560.0251No
2PDE4Bphosphodiesterase 4B [Source:HGNC Symbol;Acc:HGNC:8781]2573.9670.0415No
3PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]2593.9630.0632No
4ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]5023.2050.0743No
5NT5C3A5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:HGNC:17820]5073.1900.0917No
6HCLS1hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:HGNC:4844]8992.5240.0949No
7POLE4DNA polymerase epsilon 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:18755]9022.5120.1087No
8COX17cytochrome c oxidase copper chaperone COX17 [Source:HGNC Symbol;Acc:HGNC:2264]10312.2780.1177No
9NME1NME/NM23 nucleoside diphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:7849]10782.2250.1287No
10GTF2H5general transcription factor IIH subunit 5 [Source:HGNC Symbol;Acc:HGNC:21157]11102.1810.1398No
11APRTadenine phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:626]12012.0540.1487No
12ADRM1adhesion regulating molecule 1 [Source:HGNC Symbol;Acc:HGNC:15759]16801.6580.1448No
13GMPR2guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:HGNC:4377]18511.5360.1487No
14SNAPC4small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]19201.4930.1550No
15GTF2F1general transcription factor IIF subunit 1 [Source:HGNC Symbol;Acc:HGNC:4652]21831.3060.1551No
16ELOAelongin A [Source:HGNC Symbol;Acc:HGNC:11620]22381.2750.1606No
17POLR2CRNA polymerase II subunit C [Source:HGNC Symbol;Acc:HGNC:9189]23031.2380.1657No
18DAD1defender against cell death 1 [Source:HGNC Symbol;Acc:HGNC:2664]23381.2100.1714No
19POLR2KRNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]24251.1590.1754No
20POLR2GRNA polymerase II subunit G [Source:HGNC Symbol;Acc:HGNC:9194]27241.0190.1730No
21VPS37BVPS37B subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:25754]27671.0000.1773No
22GUK1guanylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:4693]29090.9380.1787No
23SRSF6serine and arginine rich splicing factor 6 [Source:HGNC Symbol;Acc:HGNC:10788]29600.9150.1823No
24GTF2H1general transcription factor IIH subunit 1 [Source:HGNC Symbol;Acc:HGNC:4655]31870.8240.1807No
25SDCBPsyndecan binding protein [Source:HGNC Symbol;Acc:HGNC:10662]32610.8000.1832No
26ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3435]33430.7630.1852No
27SEC61A1SEC61 translocon subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:18276]34340.7260.1867No
28ITPAinosine triphosphatase [Source:HGNC Symbol;Acc:HGNC:6176]35710.6790.1867No
29CLP1cleavage factor polyribonucleotide kinase subunit 1 [Source:HGNC Symbol;Acc:HGNC:16999]37500.6200.1853No
30POLBDNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]38870.5700.1848No
31GTF2Bgeneral transcription factor IIB [Source:HGNC Symbol;Acc:HGNC:4648]40190.5330.1842No
32ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit [Source:HGNC Symbol;Acc:HGNC:3439]40270.5290.1869No
33SUPT4H1SPT4 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11467]42330.4520.1838No
34NELFBnegative elongation factor complex member B [Source:HGNC Symbol;Acc:HGNC:24324]46810.3180.1734No
35POLR2DRNA polymerase II subunit D [Source:HGNC Symbol;Acc:HGNC:9191]47780.2920.1725No
36TP53tumor protein p53 [Source:HGNC Symbol;Acc:HGNC:11998]49250.2530.1699No
37NME3NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:7851]49670.2410.1701No
38STX3syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438]50240.2220.1698No
39ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3434]52120.1680.1657No
40CSTF3cleavage stimulation factor subunit 3 [Source:HGNC Symbol;Acc:HGNC:2485]52490.1570.1656No
41POLR1DRNA polymerase I and III subunit D [Source:HGNC Symbol;Acc:HGNC:20422]57060.1360.1540No
42RRM2Bribonucleotide reductase regulatory TP53 inducible subunit M2B [Source:HGNC Symbol;Acc:HGNC:17296]57500.1180.1534No
43TAF12TATA-box binding protein associated factor 12 [Source:HGNC Symbol;Acc:HGNC:11545]60390.0280.1458No
44CANT1calcium activated nucleotidase 1 [Source:HGNC Symbol;Acc:HGNC:19721]60810.0190.1448No
45MPGN-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]61390.0020.1433No
46BCAMbasal cell adhesion molecule (Lutheran blood group) [Source:HGNC Symbol;Acc:HGNC:6722]156670.000-0.1146No
47BOLA2bolA family member 2 [Source:HGNC Symbol;Acc:HGNC:29488]178480.000-0.1736No
48NPR2natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]207190.000-0.2513No
49ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]233600.000-0.3228No
50AK1adenylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:361]244740.000-0.3529No
51CCNOcyclin O [Source:HGNC Symbol;Acc:HGNC:18576]278870.000-0.4453No
52ERCC4ERCC excision repair 4, endonuclease catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3436]28211-0.013-0.4540No
53POLR1CRNA polymerase I and III subunit C [Source:HGNC Symbol;Acc:HGNC:20194]28228-0.016-0.4543No
54TMED2transmembrane p24 trafficking protein 2 [Source:HGNC Symbol;Acc:HGNC:16996]28400-0.066-0.4586No
55TARBP2TARBP2 subunit of RISC loading complex [Source:HGNC Symbol;Acc:HGNC:11569]28500-0.095-0.4607No
56DDB1damage specific DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2717]28705-0.155-0.4654No
57TSG101tumor susceptibility 101 [Source:HGNC Symbol;Acc:HGNC:15971]28773-0.173-0.4663No
58RALARAS like proto-oncogene A [Source:HGNC Symbol;Acc:HGNC:9839]28784-0.176-0.4656No
59EDF1endothelial differentiation related factor 1 [Source:HGNC Symbol;Acc:HGNC:3164]28845-0.196-0.4661No
60ELLelongation factor for RNA polymerase II [Source:HGNC Symbol;Acc:HGNC:23114]28865-0.202-0.4655No
61TAF13TATA-box binding protein associated factor 13 [Source:HGNC Symbol;Acc:HGNC:11546]29173-0.280-0.4723No
62SF3A3splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]29244-0.300-0.4725No
63RNMTRNA guanine-7 methyltransferase [Source:HGNC Symbol;Acc:HGNC:10075]29367-0.325-0.4741No
64DGCR8DGCR8 microprocessor complex subunit [Source:HGNC Symbol;Acc:HGNC:2847]29471-0.354-0.4749No
65NCBP2nuclear cap binding protein subunit 2 [Source:HGNC Symbol;Acc:HGNC:7659]29509-0.366-0.4739No
66POLD4DNA polymerase delta 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:14106]29564-0.377-0.4733No
67RAD52RAD52 homolog, DNA repair protein [Source:HGNC Symbol;Acc:HGNC:9824]29718-0.409-0.4752Yes
68RBX1ring-box 1 [Source:HGNC Symbol;Acc:HGNC:9928]29780-0.425-0.4745Yes
69POLR3CRNA polymerase III subunit C [Source:HGNC Symbol;Acc:HGNC:30076]29796-0.430-0.4726Yes
70BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]29815-0.434-0.4707Yes
71POLA2DNA polymerase alpha 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:30073]29922-0.461-0.4710Yes
72VPS28VPS28 subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18178]29934-0.464-0.4687Yes
73POLR2FRNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]30108-0.513-0.4706Yes
74TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]30117-0.515-0.4680Yes
75GTF2H3general transcription factor IIH subunit 3 [Source:HGNC Symbol;Acc:HGNC:4657]30134-0.520-0.4656Yes
76SSRP1structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327]30178-0.534-0.4638Yes
77SAC3D1SAC3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30179]30281-0.562-0.4635Yes
78CETN2centrin 2 [Source:HGNC Symbol;Acc:HGNC:1867]30379-0.574-0.4630Yes
79TAF9TATA-box binding protein associated factor 9 [Source:HGNC Symbol;Acc:HGNC:11542]30391-0.576-0.4601Yes
80TAF10TATA-box binding protein associated factor 10 [Source:HGNC Symbol;Acc:HGNC:11543]30453-0.593-0.4585Yes
81RAE1ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828]30545-0.619-0.4576Yes
82MPC2mitochondrial pyruvate carrier 2 [Source:HGNC Symbol;Acc:HGNC:24515]30636-0.642-0.4565Yes
83SMAD5SMAD family member 5 [Source:HGNC Symbol;Acc:HGNC:6771]30739-0.669-0.4556Yes
84SUPT5HSPT5 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11469]30763-0.675-0.4525Yes
85POLR2HRNA polymerase II subunit H [Source:HGNC Symbol;Acc:HGNC:9195]30844-0.692-0.4508Yes
86NFX1nuclear transcription factor, X-box binding 1 [Source:HGNC Symbol;Acc:HGNC:7803]30863-0.698-0.4475Yes
87ALYREFAly/REF export factor [Source:HGNC Symbol;Acc:HGNC:19071]30947-0.725-0.4458Yes
88MRPL40mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:HGNC:14491]30981-0.735-0.4426Yes
89RPA3replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]31192-0.813-0.4439Yes
90PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]31440-0.872-0.4457Yes
91VPS37DVPS37D subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18287]31486-0.890-0.4421Yes
92NUDT9nudix hydrolase 9 [Source:HGNC Symbol;Acc:HGNC:8056]31496-0.896-0.4374Yes
93NELFEnegative elongation factor complex member E [Source:HGNC Symbol;Acc:HGNC:13974]31529-0.905-0.4333Yes
94RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]31736-0.972-0.4335Yes
95ADCY6adenylate cyclase 6 [Source:HGNC Symbol;Acc:HGNC:237]31774-0.983-0.4292Yes
96POLR2ARNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]31816-0.996-0.4248Yes
97GTF2A2general transcription factor IIA subunit 2 [Source:HGNC Symbol;Acc:HGNC:4647]31824-1.002-0.4195Yes
98EIF1Beukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]31857-1.009-0.4148Yes
99TAF6TATA-box binding protein associated factor 6 [Source:HGNC Symbol;Acc:HGNC:11540]31992-1.062-0.4126Yes
100GTF3C5general transcription factor IIIC subunit 5 [Source:HGNC Symbol;Acc:HGNC:4668]32036-1.077-0.4079Yes
101HPRT1hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:5157]32065-1.093-0.4026Yes
102TK2thymidine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11831]32208-1.131-0.4002Yes
103IMPDH2inosine monophosphate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:6053]32240-1.142-0.3948Yes
104BRF2BRF2 RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:17298]32483-1.244-0.3945Yes
105NUDT21nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13870]32506-1.254-0.3883Yes
106RFC5replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973]32621-1.296-0.3842Yes
107DCTN4dynactin subunit 4 [Source:HGNC Symbol;Acc:HGNC:15518]32655-1.309-0.3779Yes
108FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]32691-1.323-0.3716Yes
109UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]32733-1.341-0.3654Yes
110POLR2IRNA polymerase II subunit I [Source:HGNC Symbol;Acc:HGNC:9196]32741-1.345-0.3582Yes
111NELFCDnegative elongation factor complex member C/D [Source:HGNC Symbol;Acc:HGNC:15934]32902-1.423-0.3547Yes
112POLD3DNA polymerase delta 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:20932]32927-1.435-0.3475Yes
113POLR2ERNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]32969-1.451-0.3406Yes
114SURF1SURF1 cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:11474]32988-1.460-0.3331Yes
115RAD51RAD51 recombinase [Source:HGNC Symbol;Acc:HGNC:9817]32989-1.461-0.3251Yes
116RPA2replication protein A2 [Source:HGNC Symbol;Acc:HGNC:10290]33014-1.473-0.3176Yes
117GSDMEgasdermin E [Source:HGNC Symbol;Acc:HGNC:2810]33024-1.476-0.3098Yes
118AAASaladin WD repeat nucleoporin [Source:HGNC Symbol;Acc:HGNC:13666]33081-1.499-0.3031Yes
119DGUOKdeoxyguanosine kinase [Source:HGNC Symbol;Acc:HGNC:2858]33131-1.521-0.2960Yes
120SNAPC5small nuclear RNA activating complex polypeptide 5 [Source:HGNC Symbol;Acc:HGNC:15484]33181-1.529-0.2890Yes
121ZNF707zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]33243-1.529-0.2822Yes
122CDAcytidine deaminase [Source:HGNC Symbol;Acc:HGNC:1712]33295-1.529-0.2752Yes
123NT5C5', 3'-nucleotidase, cytosolic [Source:HGNC Symbol;Acc:HGNC:17144]33353-1.532-0.2683Yes
124POLLDNA polymerase lambda [Source:HGNC Symbol;Acc:HGNC:9184]33385-1.548-0.2607Yes
125UPF3BUPF3B regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]33549-1.622-0.2562Yes
126PDE6Gphosphodiesterase 6G [Source:HGNC Symbol;Acc:HGNC:8789]33559-1.624-0.2475Yes
127REV3LREV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]33714-1.695-0.2424Yes
128XPCXPC complex subunit, DNA damage recognition and repair factor [Source:HGNC Symbol;Acc:HGNC:12816]34122-1.887-0.2431Yes
129USP11ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]34327-2.007-0.2376Yes
130POM121POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]34344-2.016-0.2269Yes
131ARL6IP1ADP ribosylation factor like GTPase 6 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:697]34578-2.137-0.2215Yes
132AGO4argonaute RISC component 4 [Source:HGNC Symbol;Acc:HGNC:18424]34587-2.143-0.2100Yes
133POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]34800-2.282-0.2032Yes
134RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]34864-2.323-0.1921Yes
135ERCC5ERCC excision repair 5, endonuclease [Source:HGNC Symbol;Acc:HGNC:3437]34927-2.370-0.1808Yes
136POLHDNA polymerase eta [Source:HGNC Symbol;Acc:HGNC:9181]35318-2.600-0.1771Yes
137AK3adenylate kinase 3 [Source:HGNC Symbol;Acc:HGNC:17376]35343-2.619-0.1634Yes
138POLA1DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]35370-2.648-0.1495Yes
139NME4NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:HGNC:7852]35405-2.670-0.1358Yes
140TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C [Source:HGNC Symbol;Acc:HGNC:11534]35555-2.797-0.1245Yes
141PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35620-2.871-0.1104Yes
142GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]35711-2.911-0.0969Yes
143LIG1DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]35783-2.979-0.0825Yes
144POLR3GLRNA polymerase III subunit G like [Source:HGNC Symbol;Acc:HGNC:28466]35795-2.984-0.0664Yes
145POLR2JRNA polymerase II subunit J [Source:HGNC Symbol;Acc:HGNC:9197]36064-3.246-0.0558Yes
146RFC2replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970]36357-3.546-0.0443Yes
147ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]36528-3.758-0.0282Yes
148DDB2damage specific DNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2718]36636-3.910-0.0097Yes
149DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]36711-3.9930.0103Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_DNA_REPAIR   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_DNA_REPAIR: Random ES distribution   
Gene set null distribution of ES for HALLMARK_DNA_REPAIR