Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetHALLMARK_INTERFERON_ALPHA_RESPONSE
Enrichment Score (ES)0.8541268
Normalized Enrichment Score (NES)2.157931
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1RSAD2radical S-adenosyl methionine domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30908]194.9710.0204Yes
2GBP4guanylate binding protein 4 [Source:HGNC Symbol;Acc:HGNC:20480]344.9500.0408Yes
3ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]534.8740.0608Yes
4MX1MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532]544.8700.0813Yes
5CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]594.8560.1016Yes
6IFIT2interferon induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409]634.8480.1219Yes
7OASL2'-5'-oligoadenylate synthetase like [Source:HGNC Symbol;Acc:HGNC:8090]734.7980.1419Yes
8IRF7interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122]964.6890.1610Yes
9CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]1024.6370.1803Yes
10GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]1054.6080.1997Yes
11USP18ubiquitin specific peptidase 18 [Source:HGNC Symbol;Acc:HGNC:12616]1064.6070.2190Yes
12IFIH1interferon induced with helicase C domain 1 [Source:HGNC Symbol;Acc:HGNC:18873]1174.5530.2379Yes
13DHX58DExH-box helicase 58 [Source:HGNC Symbol;Acc:HGNC:29517]1214.5210.2568Yes
14HELZ2helicase with zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:30021]1404.4340.2750Yes
15HERC6HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 [Source:HGNC Symbol;Acc:HGNC:26072]1434.4110.2935Yes
16CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]1504.3820.3118Yes
17DDX60DExD/H-box helicase 60 [Source:HGNC Symbol;Acc:HGNC:25942]1824.2220.3287Yes
18IFI44interferon induced protein 44 [Source:HGNC Symbol;Acc:HGNC:16938]2074.1630.3455Yes
19IFI35interferon induced protein 35 [Source:HGNC Symbol;Acc:HGNC:5399]2174.1030.3625Yes
20PROCRprotein C receptor [Source:HGNC Symbol;Acc:HGNC:9452]2204.0910.3797Yes
21TRAFD1TRAF-type zinc finger domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24808]2404.0320.3961Yes
22PARP14poly(ADP-ribose) polymerase family member 14 [Source:HGNC Symbol;Acc:HGNC:29232]2703.9260.4119Yes
23TRIM21tripartite motif containing 21 [Source:HGNC Symbol;Acc:HGNC:11312]2723.9150.4283Yes
24SAMD9sterile alpha motif domain containing 9 [Source:HGNC Symbol;Acc:HGNC:1348]2873.8520.4441Yes
25PARP12poly(ADP-ribose) polymerase family member 12 [Source:HGNC Symbol;Acc:HGNC:21919]2903.8390.4602Yes
26OAS12'-5'-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086]3013.8110.4760Yes
27STAT2signal transducer and activator of transcription 2 [Source:HGNC Symbol;Acc:HGNC:11363]3083.7770.4917Yes
28SAMD9Lsterile alpha motif domain containing 9 like [Source:HGNC Symbol;Acc:HGNC:1349]3203.7190.5070Yes
29LGALS3BPgalectin 3 binding protein [Source:HGNC Symbol;Acc:HGNC:6564]3263.6980.5224Yes
30UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]3353.6490.5376Yes
31UBE2L6ubiquitin conjugating enzyme E2 L6 [Source:HGNC Symbol;Acc:HGNC:12490]3613.5770.5519Yes
32EPSTI1epithelial stromal interaction 1 [Source:HGNC Symbol;Acc:HGNC:16465]3683.5510.5667Yes
33TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]3713.5460.5815Yes
34TENT5Aterminal nucleotidyltransferase 5A [Source:HGNC Symbol;Acc:HGNC:18345]4363.3950.5941Yes
35TRIM25tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]4573.3210.6075Yes
36ISG15ISG15 ubiquitin like modifier [Source:HGNC Symbol;Acc:HGNC:4053]4973.2220.6200Yes
37CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]5113.1730.6330Yes
38IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]6352.9260.6420Yes
39PNPT1polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]6402.9170.6541Yes
40MOV10Mov10 RISC complex RNA helicase [Source:HGNC Symbol;Acc:HGNC:7200]6632.8810.6657Yes
41ADARadenosine deaminase RNA specific [Source:HGNC Symbol;Acc:HGNC:225]6902.8160.6768Yes
42TRIM14tripartite motif containing 14 [Source:HGNC Symbol;Acc:HGNC:16283]7202.7470.6876Yes
43PARP9poly(ADP-ribose) polymerase family member 9 [Source:HGNC Symbol;Acc:HGNC:24118]7522.6960.6981Yes
44RIPK2receptor interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:10020]7782.6360.7085Yes
45PSME2proteasome activator subunit 2 [Source:HGNC Symbol;Acc:HGNC:9569]7882.6150.7192Yes
46PSMB9proteasome 20S subunit beta 9 [Source:HGNC Symbol;Acc:HGNC:9546]8462.6010.7286Yes
47EIF2AK2eukaryotic translation initiation factor 2 alpha kinase 2 [Source:HGNC Symbol;Acc:HGNC:9437]8772.5510.7385Yes
48TDRD7tudor domain containing 7 [Source:HGNC Symbol;Acc:HGNC:30831]9292.4660.7475Yes
49OGFRopioid growth factor receptor [Source:HGNC Symbol;Acc:HGNC:15768]9562.4230.7570Yes
50PSMB8proteasome 20S subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:9545]9772.3890.7665Yes
51IFIT3interferon induced protein with tetratricopeptide repeats 3 [Source:HGNC Symbol;Acc:HGNC:5411]10082.3270.7755Yes
52IL7interleukin 7 [Source:HGNC Symbol;Acc:HGNC:6023]10102.3230.7852Yes
53IFITM2interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]10302.2810.7943Yes
54PSME1proteasome activator subunit 1 [Source:HGNC Symbol;Acc:HGNC:9568]10712.2340.8026Yes
55IRF9interferon regulatory factor 9 [Source:HGNC Symbol;Acc:HGNC:6131]12362.0210.8067Yes
56CD47CD47 molecule [Source:HGNC Symbol;Acc:HGNC:1682]12512.0030.8147Yes
57PLSCR1phospholipid scramblase 1 [Source:HGNC Symbol;Acc:HGNC:9092]12611.9890.8229Yes
58CMTR1cap methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:21077]13161.9320.8295Yes
59IL15interleukin 15 [Source:HGNC Symbol;Acc:HGNC:5977]13181.9300.8376Yes
60IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]13381.9130.8451Yes
61LAP3leucine aminopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:18449]14261.8100.8504Yes
62TRIM26tripartite motif containing 26 [Source:HGNC Symbol;Acc:HGNC:12962]16081.7510.8529Yes
63SP110SP110 nuclear body protein [Source:HGNC Symbol;Acc:HGNC:5401]18181.5600.8538Yes
64CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]20251.4070.8541Yes
65PSMA3proteasome 20S subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:9532]22621.2590.8530No
66WARS1tryptophanyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:12729]24371.1540.8532No
67HLA-Cmajor histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]25911.0950.8537No
68B2Mbeta-2-microglobulin [Source:HGNC Symbol;Acc:HGNC:914]29110.9380.8490No
69RNF31ring finger protein 31 [Source:HGNC Symbol;Acc:HGNC:16031]32940.7840.8420No
70TMEM140transmembrane protein 140 [Source:HGNC Symbol;Acc:HGNC:21870]33290.7710.8443No
71IFI27interferon alpha inducible protein 27 [Source:HGNC Symbol;Acc:HGNC:5397]37180.6280.8364No
72NCOA7nuclear receptor coactivator 7 [Source:HGNC Symbol;Acc:HGNC:21081]61220.0070.7715No
73SELLselectin L [Source:HGNC Symbol;Acc:HGNC:10720]69950.0000.7479No
74CCRL2C-C motif chemokine receptor like 2 [Source:HGNC Symbol;Acc:HGNC:1612]86240.0000.7039No
75BATF2basic leucine zipper ATF-like transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:25163]87500.0000.7005No
76LY6Elymphocyte antigen 6 family member E [Source:HGNC Symbol;Acc:HGNC:6727]91090.0000.6909No
77RTP4receptor transporter protein 4 [Source:HGNC Symbol;Acc:HGNC:23992]104110.0000.6557No
78IFI30IFI30 lysosomal thiol reductase [Source:HGNC Symbol;Acc:HGNC:5398]114310.0000.6282No
79BST2bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]123490.0000.6034No
80IL4Rinterleukin 4 receptor [Source:HGNC Symbol;Acc:HGNC:6015]137560.0000.5654No
81TRIM5tripartite motif containing 5 [Source:HGNC Symbol;Acc:HGNC:16276]177660.0000.4570No
82CXCL11C-X-C motif chemokine ligand 11 [Source:HGNC Symbol;Acc:HGNC:10638]189170.0000.4259No
83NMIN-myc and STAT interactor [Source:HGNC Symbol;Acc:HGNC:7854]193410.0000.4145No
84IFI44Linterferon induced protein 44 like [Source:HGNC Symbol;Acc:HGNC:17817]207010.0000.3777No
85LAMP3lysosomal associated membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:14582]215870.0000.3538No
86NUB1negative regulator of ubiquitin like proteins 1 [Source:HGNC Symbol;Acc:HGNC:17623]28693-0.1510.1624No
87ELF1E74 like ETS transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:3316]29398-0.3340.1448No
88LPAR6lysophosphatidic acid receptor 6 [Source:HGNC Symbol;Acc:HGNC:15520]29512-0.3670.1432No
89IRF2interferon regulatory factor 2 [Source:HGNC Symbol;Acc:HGNC:6117]30853-0.6960.1100No
90SLC25A28solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]31007-0.7460.1090No
91CNP2',3'-cyclic nucleotide 3' phosphodiesterase [Source:HGNC Symbol;Acc:HGNC:2158]31452-0.8760.1006No
92IFITM1interferon induced transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:5412]32214-1.1340.0848No
93MVB12Amultivesicular body subunit 12A [Source:HGNC Symbol;Acc:HGNC:25153]32387-1.2110.0853No
94CD74CD74 molecule [Source:HGNC Symbol;Acc:HGNC:1697]32684-1.3190.0828No
95C1Scomplement C1s [Source:HGNC Symbol;Acc:HGNC:1247]33542-1.6170.0665No
96TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]35949-3.1290.0146No
97GMPRguanosine monophosphate reductase [Source:HGNC Symbol;Acc:HGNC:4376]36601-3.8610.0132No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_ALPHA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_ALPHA_RESPONSE