Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetHALLMARK_MYC_TARGETS_V2
Enrichment Score (ES)0.37044325
Normalized Enrichment Score (NES)0.86458784
Nominal p-value0.8194444
FDR q-value0.87900674
FWER p-Value0.995
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_MYC_TARGETS_V2   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1DUSP2dual specificity phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:3068]1014.6410.0548Yes
2MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]1344.4610.1093Yes
3GRWD1glutamate rich WD repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:21270]9062.5040.1195Yes
4RRP9ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]10892.2120.1421Yes
5IPO4importin 4 [Source:HGNC Symbol;Acc:HGNC:19426]11332.1470.1675Yes
6UTP20UTP20 small subunit processome component [Source:HGNC Symbol;Acc:HGNC:17897]16271.7310.1757Yes
7RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]17811.5840.1912Yes
8NOP2NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]18491.5390.2085Yes
9HSPE1heat shock protein family E (Hsp10) member 1 [Source:HGNC Symbol;Acc:HGNC:5269]19131.5010.2254Yes
10NOP16NOP16 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:26934]20221.4080.2400Yes
11FARSAphenylalanyl-tRNA synthetase subunit alpha [Source:HGNC Symbol;Acc:HGNC:3592]20341.4010.2571Yes
12HK2hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]21261.3380.2712Yes
13MRTO4MRT4 homolog, ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:18477]21561.3210.2868Yes
14WDR43WD repeat domain 43 [Source:HGNC Symbol;Acc:HGNC:28945]23781.1900.2956Yes
15PUS1pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:15508]23791.1890.3103Yes
16NIP7nucleolar pre-rRNA processing protein NIP7 [Source:HGNC Symbol;Acc:HGNC:24328]23941.1810.3246Yes
17PPRC1PPARG related coactivator 1 [Source:HGNC Symbol;Acc:HGNC:30025]27601.0050.3272Yes
18BYSLbystin like [Source:HGNC Symbol;Acc:HGNC:1157]28950.9460.3353Yes
19TCOF1treacle ribosome biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:11654]31240.8580.3398Yes
20MYBBP1AMYB binding protein 1a [Source:HGNC Symbol;Acc:HGNC:7546]31550.8440.3495Yes
21PA2G4proliferation-associated 2G4 [Source:HGNC Symbol;Acc:HGNC:8550]33310.7690.3543Yes
22PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]35550.6850.3568Yes
23HSPD1heat shock protein family D (Hsp60) member 1 [Source:HGNC Symbol;Acc:HGNC:5261]36000.6700.3639Yes
24IMP4IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856]36570.6500.3704Yes
25DDX18DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]39360.5590.3699No
26PES1pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8848]46350.3300.3551No
27RCL1RNA terminal phosphate cyclase like 1 [Source:HGNC Symbol;Acc:HGNC:17687]46700.3220.3582No
28NOP56NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:15911]46920.3150.3615No
29TBRG4transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]49360.2480.3580No
30SRMspermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]50090.2260.3589No
31MPHOSPH10M-phase phosphoprotein 10 [Source:HGNC Symbol;Acc:HGNC:7213]50660.2090.3600No
32AIMP2aminoacyl tRNA synthetase complex interacting multifunctional protein 2 [Source:HGNC Symbol;Acc:HGNC:20609]51070.1990.3614No
33LAS1LLAS1 like ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:25726]51110.1980.3637No
34NOC4Lnucleolar complex associated 4 homolog [Source:HGNC Symbol;Acc:HGNC:28461]51950.1720.3636No
35NPM1nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]59860.0440.3428No
36PPANpeter pan homolog [Source:HGNC Symbol;Acc:HGNC:9227]28265-0.027-0.2584No
37GNL3G protein nucleolar 3 [Source:HGNC Symbol;Acc:HGNC:29931]28345-0.047-0.2600No
38WDR74WD repeat domain 74 [Source:HGNC Symbol;Acc:HGNC:25529]28359-0.052-0.2597No
39NOLC1nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]28681-0.147-0.2665No
40SLC19A1solute carrier family 19 member 1 [Source:HGNC Symbol;Acc:HGNC:10937]29079-0.253-0.2741No
41PRMT3protein arginine methyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:30163]31223-0.822-0.3218No
42TMEM97transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]31439-0.871-0.3168No
43RABEPKRab9 effector protein with kelch motifs [Source:HGNC Symbol;Acc:HGNC:16896]31617-0.934-0.3100No
44DCTPP1dCTP pyrophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:28777]31700-0.964-0.3002No
45TFB2Mtranscription factor B2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:18559]32109-1.105-0.2975No
46SUPV3L1Suv3 like RNA helicase [Source:HGNC Symbol;Acc:HGNC:11471]32766-1.356-0.2984No
47NDUFAF4NADH:ubiquinone oxidoreductase complex assembly factor 4 [Source:HGNC Symbol;Acc:HGNC:21034]33349-1.530-0.2951No
48MCM5minichromosome maintenance complex component 5 [Source:HGNC Symbol;Acc:HGNC:6948]33683-1.683-0.2833No
49CDK4cyclin dependent kinase 4 [Source:HGNC Symbol;Acc:HGNC:1773]33985-1.823-0.2688No
50MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34046-1.854-0.2474No
51PLK4polo like kinase 4 [Source:HGNC Symbol;Acc:HGNC:11397]34248-1.957-0.2286No
52EXOSC5exosome component 5 [Source:HGNC Symbol;Acc:HGNC:24662]35379-2.657-0.2261No
53SLC29A2solute carrier family 29 member 2 [Source:HGNC Symbol;Acc:HGNC:11004]35488-2.732-0.1951No
54PLK1polo like kinase 1 [Source:HGNC Symbol;Acc:HGNC:9077]35969-3.152-0.1690No
55SORDsorbitol dehydrogenase [Source:HGNC Symbol;Acc:HGNC:11184]36354-3.546-0.1354No
56CBX3chromobox 3 [Source:HGNC Symbol;Acc:HGNC:1553]36526-3.754-0.0935No
57UNGuracil DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:12572]36844-4.220-0.0497No
58MAP3K6mitogen-activated protein kinase kinase kinase 6 [Source:HGNC Symbol;Acc:HGNC:6858]36969-4.5390.0033No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_MYC_TARGETS_V2   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_MYC_TARGETS_V2: Random ES distribution   
Gene set null distribution of ES for HALLMARK_MYC_TARGETS_V2