Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetHALLMARK_TGF_BETA_SIGNALING
Enrichment Score (ES)0.57572347
Normalized Enrichment Score (NES)1.332108
Nominal p-value0.04901961
FDR q-value0.06363818
FWER p-Value0.149
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TGF_BETA_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]864.7390.0527Yes
2ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]1694.2860.1002Yes
3ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]1954.1900.1482Yes
4SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]2274.0650.1946Yes
5FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]2583.9640.2398Yes
6JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]3593.5930.2788Yes
7ID2inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]4673.3010.3142Yes
8THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]4883.2370.3513Yes
9SKILSKI like proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10897]6202.9600.3821Yes
10WWTR1WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]6482.9050.4151Yes
11TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]7152.7610.4454Yes
12BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]7532.6920.4756Yes
13TGIF1TGFB induced factor homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11776]9232.4840.4999Yes
14SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]9392.4450.5279Yes
15PPP1R15Aprotein phosphatase 1 regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]11772.1050.5459Yes
16ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]15561.8010.5566Yes
17SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]18731.5200.5658Yes
18UBE2D3ubiquitin conjugating enzyme E2 D3 [Source:HGNC Symbol;Acc:HGNC:12476]20931.3680.5757Yes
19HDAC1histone deacetylase 1 [Source:HGNC Symbol;Acc:HGNC:4852]26231.0780.5740No
20PPP1CAprotein phosphatase 1 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9281]36300.6580.5544No
21BMPR2bone morphogenetic protein receptor type 2 [Source:HGNC Symbol;Acc:HGNC:1078]38470.5820.5554No
22SMURF2SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16809]41210.4960.5538No
23XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]49830.2350.5332No
24RAB31RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9771]50180.2230.5349No
25CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]50900.2020.5353No
26CDK9cyclin dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]59380.0600.5132No
27SMURF1SMAD specific E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:16807]61040.0120.5089No
28CDH1cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]93130.0000.4222No
29CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]125010.0000.3362No
30TJP1tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]133350.0000.3137No
31NOGnoggin [Source:HGNC Symbol;Acc:HGNC:7866]193580.0000.1511No
32LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]249130.0000.0011No
33IFNGR2interferon gamma receptor 2 [Source:HGNC Symbol;Acc:HGNC:5440]252030.000-0.0067No
34APCAPC regulator of WNT signaling pathway [Source:HGNC Symbol;Acc:HGNC:583]28491-0.093-0.0943No
35SKISKI proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10896]28722-0.159-0.0987No
36MAP3K7mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]28758-0.169-0.0977No
37HIPK2homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]28793-0.179-0.0965No
38BMPR1Abone morphogenetic protein receptor type 1A [Source:HGNC Symbol;Acc:HGNC:1076]29288-0.309-0.1063No
39ARID4BAT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]29348-0.320-0.1041No
40NCOR2nuclear receptor corepressor 2 [Source:HGNC Symbol;Acc:HGNC:7673]29591-0.385-0.1062No
41FNTAfarnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]29715-0.409-0.1048No
42FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]29999-0.482-0.1068No
43ACVR1activin A receptor type 1 [Source:HGNC Symbol;Acc:HGNC:171]30101-0.510-0.1036No
44PPM1Aprotein phosphatase, Mg2+/Mn2+ dependent 1A [Source:HGNC Symbol;Acc:HGNC:9275]30165-0.530-0.0992No
45RHOAras homolog family member A [Source:HGNC Symbol;Acc:HGNC:667]30720-0.663-0.1064No
46LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]31659-0.948-0.1207No
47TRIM33tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]31864-1.011-0.1145No
48BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]33167-1.529-0.1319No
49TGFBR1transforming growth factor beta receptor 1 [Source:HGNC Symbol;Acc:HGNC:11772]35309-2.595-0.1596No
50SMAD6SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]36075-3.247-0.1426No
51SMAD3SMAD family member 3 [Source:HGNC Symbol;Acc:HGNC:6769]36143-3.343-0.1056No
52SMAD1SMAD family member 1 [Source:HGNC Symbol;Acc:HGNC:6767]36206-3.402-0.0677No
53KLF10Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]36608-3.870-0.0336No
54SPTBN1spectrin beta, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11275]36727-4.0150.0098No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TGF_BETA_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TGF_BETA_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TGF_BETA_SIGNALING