Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetRB_DN.V1_DN
Enrichment Score (ES)0.5411652
Normalized Enrichment Score (NES)1.4225115
Nominal p-value0.0
FDR q-value0.059186604
FWER p-Value0.179
Table: GSEA Results Summary



Fig 1: Enrichment plot: RB_DN.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1TNCtenascin C [Source:HGNC Symbol;Acc:HGNC:5318]24.9660.0440Yes
2PDGFBplatelet derived growth factor subunit B [Source:HGNC Symbol;Acc:HGNC:8800]384.3440.0815Yes
3USP18ubiquitin specific peptidase 18 [Source:HGNC Symbol;Acc:HGNC:12616]444.2910.1194Yes
4GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]574.1230.1557Yes
5CISHcytokine inducible SH2 containing protein [Source:HGNC Symbol;Acc:HGNC:1984]933.7280.1878Yes
6CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]1353.4390.2171Yes
7MMP13matrix metallopeptidase 13 [Source:HGNC Symbol;Acc:HGNC:7159]2382.9090.2402Yes
8LGALS9galectin 9 [Source:HGNC Symbol;Acc:HGNC:6570]2632.8190.2645Yes
9CTSCcathepsin C [Source:HGNC Symbol;Acc:HGNC:2528]2842.7310.2882Yes
10FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]3582.5060.3084Yes
11NOCTnocturnin [Source:HGNC Symbol;Acc:HGNC:14254]4692.2420.3253Yes
12CHAC1ChaC glutathione specific gamma-glutamylcyclotransferase 1 [Source:HGNC Symbol;Acc:HGNC:28680]4792.2150.3447Yes
13HSPA5heat shock protein family A (Hsp70) member 5 [Source:HGNC Symbol;Acc:HGNC:5238]5432.0840.3615Yes
14NEDD9neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]5912.0220.3782Yes
15FLNAfilamin A [Source:HGNC Symbol;Acc:HGNC:3754]6231.9780.3948Yes
16MMP9matrix metallopeptidase 9 [Source:HGNC Symbol;Acc:HGNC:7176]7191.8380.4086Yes
17CD9CD9 molecule [Source:HGNC Symbol;Acc:HGNC:1709]7811.7630.4225Yes
18ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]7951.7420.4376Yes
19PSME2proteasome activator subunit 2 [Source:HGNC Symbol;Acc:HGNC:9569]11971.3810.4390Yes
20MYADMmyeloid associated differentiation marker [Source:HGNC Symbol;Acc:HGNC:7544]12291.3590.4502Yes
21PSMB10proteasome 20S subunit beta 10 [Source:HGNC Symbol;Acc:HGNC:9538]13511.2700.4582Yes
22SLC7A5solute carrier family 7 member 5 [Source:HGNC Symbol;Acc:HGNC:11063]15371.1610.4635Yes
23ANKFY1ankyrin repeat and FYVE domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20763]15401.1570.4737Yes
24DYNLL1dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476]16431.1100.4808Yes
25BCCIPBRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:HGNC:978]18651.0080.4838Yes
26DDX3YDEAD-box helicase 3 Y-linked [Source:HGNC Symbol;Acc:HGNC:2699]19870.9580.4890Yes
27CDIPTCDP-diacylglycerol--inositol 3-phosphatidyltransferase [Source:HGNC Symbol;Acc:HGNC:1769]20140.9480.4967Yes
28BASP1brain abundant membrane attached signal protein 1 [Source:HGNC Symbol;Acc:HGNC:957]20200.9440.5049Yes
29PPP2R1Bprotein phosphatase 2 scaffold subunit Abeta [Source:HGNC Symbol;Acc:HGNC:9303]22360.8680.5068Yes
30PSME1proteasome activator subunit 1 [Source:HGNC Symbol;Acc:HGNC:9568]22960.8460.5127Yes
31CAP1cyclase associated actin cytoskeleton regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:20040]23730.8170.5179Yes
32PRKAR1Aprotein kinase cAMP-dependent type I regulatory subunit alpha [Source:HGNC Symbol;Acc:HGNC:9388]24450.7950.5230Yes
33MVPmajor vault protein [Source:HGNC Symbol;Acc:HGNC:7531]26700.7250.5234Yes
34LAMTOR3late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [Source:HGNC Symbol;Acc:HGNC:15606]27040.7210.5289Yes
35EFL1elongation factor like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:25789]30800.6210.5242Yes
36DDIT3DNA damage inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]31140.6100.5288Yes
37UBA5ubiquitin like modifier activating enzyme 5 [Source:HGNC Symbol;Acc:HGNC:23230]31820.5910.5322Yes
38DDIT4DNA damage inducible transcript 4 [Source:HGNC Symbol;Acc:HGNC:24944]31900.5890.5372Yes
39SH3BP5LSH3 binding domain protein 5 like [Source:HGNC Symbol;Acc:HGNC:29360]32350.5790.5412Yes
40NFIL3nuclear factor, interleukin 3 regulated [Source:HGNC Symbol;Acc:HGNC:7787]35040.5160.5385No
41STARD3NLSTARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]36000.4950.5403No
42P4HA1prolyl 4-hydroxylase subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8546]38200.4540.5384No
43AGRNagrin [Source:HGNC Symbol;Acc:HGNC:329]38910.4410.5404No
44TMEM42transmembrane protein 42 [Source:HGNC Symbol;Acc:HGNC:28444]41720.3920.5363No
45ARL1ADP ribosylation factor like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:692]48230.2720.5212No
46RHOVras homolog family member V [Source:HGNC Symbol;Acc:HGNC:18313]49910.2410.5188No
47PDCD6programmed cell death 6 [Source:HGNC Symbol;Acc:HGNC:8765]51720.2140.5158No
48EIF4Eeukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:HGNC:3287]51740.2140.5177No
49NKAPNFKB activating protein [Source:HGNC Symbol;Acc:HGNC:29873]52470.2040.5175No
50LMAN1lectin, mannose binding 1 [Source:HGNC Symbol;Acc:HGNC:6631]53410.1880.5167No
51WNT3Wnt family member 3 [Source:HGNC Symbol;Acc:HGNC:12782]58020.1090.5052No
52MSMO1methylsterol monooxygenase 1 [Source:HGNC Symbol;Acc:HGNC:10545]60280.0820.4998No
53TLL1tolloid like 1 [Source:HGNC Symbol;Acc:HGNC:11843]61710.0610.4965No
54LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]64490.0070.4891No
55CALCBcalcitonin related polypeptide beta [Source:HGNC Symbol;Acc:HGNC:1438]89580.0000.4213No
56LCE5Alate cornified envelope 5A [Source:HGNC Symbol;Acc:HGNC:16614]95840.0000.4044No
57RASL11BRAS like family 11 member B [Source:HGNC Symbol;Acc:HGNC:23804]99330.0000.3949No
58ADAM12ADAM metallopeptidase domain 12 [Source:HGNC Symbol;Acc:HGNC:190]101240.0000.3898No
59HS3ST1heparan sulfate-glucosamine 3-sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:5194]101930.0000.3880No
60PPBPpro-platelet basic protein [Source:HGNC Symbol;Acc:HGNC:9240]111540.0000.3620No
61ACKR3atypical chemokine receptor 3 [Source:HGNC Symbol;Acc:HGNC:23692]112780.0000.3587No
62C10orf99chromosome 10 open reading frame 99 [Source:HGNC Symbol;Acc:HGNC:31428]113190.0000.3576No
63S100A16S100 calcium binding protein A16 [Source:HGNC Symbol;Acc:HGNC:20441]118750.0000.3426No
64IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]119500.0000.3406No
65AGR3anterior gradient 3, protein disulphide isomerase family member [Source:HGNC Symbol;Acc:HGNC:24167]122650.0000.3321No
66CELSR1cadherin EGF LAG seven-pass G-type receptor 1 [Source:HGNC Symbol;Acc:HGNC:1850]124170.0000.3280No
67BST2bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]126120.0000.3227No
68MOXD1monooxygenase DBH like 1 [Source:HGNC Symbol;Acc:HGNC:21063]131540.0000.3081No
69IL33interleukin 33 [Source:HGNC Symbol;Acc:HGNC:16028]139630.0000.2863No
70DKK3dickkopf WNT signaling pathway inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:2893]164440.0000.2192No
71H19H19 imprinted maternally expressed transcript [Source:HGNC Symbol;Acc:HGNC:4713]171950.0000.1989No
72S1PR5sphingosine-1-phosphate receptor 5 [Source:HGNC Symbol;Acc:HGNC:14299]180310.0000.1763No
73BNC1basonuclin 1 [Source:HGNC Symbol;Acc:HGNC:1081]193000.0000.1420No
74GJB2gap junction protein beta 2 [Source:HGNC Symbol;Acc:HGNC:4284]210090.0000.0958No
75F2RL1F2R like trypsin receptor 1 [Source:HGNC Symbol;Acc:HGNC:3538]212570.0000.0891No
76LRRC4leucine rich repeat containing 4 [Source:HGNC Symbol;Acc:HGNC:15586]228970.0000.0448No
77LAMB3laminin subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:6490]239240.0000.0170No
78C18orf32chromosome 18 open reading frame 32 [Source:HGNC Symbol;Acc:HGNC:31690]246970.000-0.0039No
79CST9cystatin 9 [Source:HGNC Symbol;Acc:HGNC:13261]249040.000-0.0094No
80FHL1four and a half LIM domains 1 [Source:HGNC Symbol;Acc:HGNC:3702]260460.000-0.0403No
81SLCO2A1solute carrier organic anion transporter family member 2A1 [Source:HGNC Symbol;Acc:HGNC:10955]268290.000-0.0615No
82ST8SIA2ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10870]272170.000-0.0719No
83TUBA4Atubulin alpha 4a [Source:HGNC Symbol;Acc:HGNC:12407]27736-0.002-0.0859No
84FEZ2fasciculation and elongation protein zeta 2 [Source:HGNC Symbol;Acc:HGNC:3660]28446-0.116-0.1041No
85SARAFstore-operated calcium entry associated regulatory factor [Source:HGNC Symbol;Acc:HGNC:28789]28553-0.132-0.1058No
86CAV1caveolin 1 [Source:HGNC Symbol;Acc:HGNC:1527]28793-0.162-0.1108No
87TMEM50Btransmembrane protein 50B [Source:HGNC Symbol;Acc:HGNC:1280]28800-0.164-0.1095No
88RPS2ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]28999-0.184-0.1132No
89GOSR2golgi SNAP receptor complex member 2 [Source:HGNC Symbol;Acc:HGNC:4431]29352-0.231-0.1207No
90COL18A1collagen type XVIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2195]29405-0.236-0.1200No
91DNAJC4DnaJ heat shock protein family (Hsp40) member C4 [Source:HGNC Symbol;Acc:HGNC:5271]29498-0.249-0.1203No
92ANXA11annexin A11 [Source:HGNC Symbol;Acc:HGNC:535]29622-0.268-0.1212No
93CYTH1cytohesin 1 [Source:HGNC Symbol;Acc:HGNC:9501]29669-0.276-0.1200No
94ANKRD40ankyrin repeat domain 40 [Source:HGNC Symbol;Acc:HGNC:28233]29738-0.286-0.1193No
95SLC7A3solute carrier family 7 member 3 [Source:HGNC Symbol;Acc:HGNC:11061]30164-0.351-0.1277No
96ADAMTS1ADAM metallopeptidase with thrombospondin type 1 motif 1 [Source:HGNC Symbol;Acc:HGNC:217]30183-0.354-0.1251No
97SMIM3small integral membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:30248]30818-0.452-0.1382No
98TMEM140transmembrane protein 140 [Source:HGNC Symbol;Acc:HGNC:21870]30934-0.470-0.1371No
99CREB3L2cAMP responsive element binding protein 3 like 2 [Source:HGNC Symbol;Acc:HGNC:23720]30965-0.474-0.1338No
100STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]30967-0.474-0.1296No
101UNC119Bunc-119 lipid binding chaperone B [Source:HGNC Symbol;Acc:HGNC:16488]31031-0.484-0.1270No
102IRX4iroquois homeobox 4 [Source:HGNC Symbol;Acc:HGNC:6129]31050-0.488-0.1232No
103H2BC14H2B clustered histone 14 [Source:HGNC Symbol;Acc:HGNC:4750]31513-0.571-0.1306No
104SQLEsqualene epoxidase [Source:HGNC Symbol;Acc:HGNC:11279]31830-0.631-0.1335No
105MICAL2microtubule associated monooxygenase, calponin and LIM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24693]32286-0.717-0.1395No
106SEC23ASec23 homolog A, COPII coat complex component [Source:HGNC Symbol;Acc:HGNC:10701]32645-0.810-0.1420No
107TMCC3transmembrane and coiled-coil domain family 3 [Source:HGNC Symbol;Acc:HGNC:29199]32824-0.854-0.1392No
108TRAPPC12trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]32941-0.890-0.1345No
109MYORGmyogenesis regulating glycosidase (putative) [Source:HGNC Symbol;Acc:HGNC:19918]33020-0.905-0.1286No
110CTNNAL1catenin alpha like 1 [Source:HGNC Symbol;Acc:HGNC:2512]33064-0.916-0.1216No
111UROSuroporphyrinogen III synthase [Source:HGNC Symbol;Acc:HGNC:12592]33599-1.055-0.1267No
112CDC42SE2CDC42 small effector 2 [Source:HGNC Symbol;Acc:HGNC:18547]33669-1.081-0.1190No
113PMVKphosphomevalonate kinase [Source:HGNC Symbol;Acc:HGNC:9141]33810-1.122-0.1128No
114FAM102Afamily with sequence similarity 102 member A [Source:HGNC Symbol;Acc:HGNC:31419]34022-1.198-0.1079No
115DUSP14dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]34313-1.296-0.1043No
116NSDHLNAD(P) dependent steroid dehydrogenase-like [Source:HGNC Symbol;Acc:HGNC:13398]34991-1.606-0.1083No
117ANXA6annexin A6 [Source:HGNC Symbol;Acc:HGNC:544]35442-1.881-0.1038No
118BHLHE40basic helix-loop-helix family member e40 [Source:HGNC Symbol;Acc:HGNC:1046]35625-2.002-0.0910No
119H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]36027-2.318-0.0813No
120PLXNA2plexin A2 [Source:HGNC Symbol;Acc:HGNC:9100]36242-2.527-0.0647No
121LIFRLIF receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:6597]36589-2.973-0.0477No
122NDRG1N-myc downstream regulated 1 [Source:HGNC Symbol;Acc:HGNC:7679]36617-3.023-0.0216No
123RB1RB transcriptional corepressor 1 [Source:HGNC Symbol;Acc:HGNC:9884]36960-3.8810.0035No
Table: GSEA details [plain text format]



Fig 2: RB_DN.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: RB_DN.V1_DN: Random ES distribution   
Gene set null distribution of ES for RB_DN.V1_DN