normalization: RPKM
bamFilesList: ['WT_GAQ2/STAR/Aligned.out.primary.rmdup.sorted.bam']
binLength: 1
numberOfSamples: None
blackListFileName: None
defaultFragmentLength: read length
numberOfProcessors: 8
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 1
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000