STAR version=2.7.10a
STAR compilation time,server,dir=2022-01-14T18:50:00-05:00 :/home/dobin/data/STAR/STARcode/STAR.master/source
STAR git: On branch master ; commit ae26add7ea1724f3281ec8abedb71bcff6a4ae73 ; diff files: CHANGES.md README.md RELEASEnotes.md doc/STARmanual.pdf extras/doc-latex/STARmanual.tex extras/doc-latex/convertParDefToLatexTable.awk extras/doc-latex/parametersDefault.tex extras/docker/Dockerfile source/VERSION 
##### Command Line:
STAR --runThreadN {threads} --genomeDir {index} --readFilesIn {R1} {R2} --outFileNamePrefix {out_prefix} {others}
##### Initial USER parameters from Command Line:
outFileNamePrefix                 {out_prefix}
###### All USER parameters from Command Line:
runThreadN                    0     ~RE-DEFINED
genomeDir                     {index}     ~RE-DEFINED
readFilesIn                   {R1}   {R2}        ~RE-DEFINED
outFileNamePrefix             {out_prefix}     ~RE-DEFINED
##### Finished reading parameters from all sources

##### Final user re-defined parameters-----------------:
runThreadN                        0
genomeDir                         {index}
readFilesIn                       {R1}   {R2}   
outFileNamePrefix                 {out_prefix}

-------------------------------
##### Final effective command line:
STAR   --runThreadN 0   --genomeDir {index}   --readFilesIn {R1}   {R2}      --outFileNamePrefix {out_prefix}
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EXITING: fatal input ERROR: runThreadN must be >0, user-defined runThreadN=0

Nov 18 11:36:14 ...... FATAL ERROR, exiting