STAR version=2.7.10a
STAR compilation time,server,dir=2022-01-14T18:50:00-05:00 :/home/dobin/data/STAR/STARcode/STAR.master/source
STAR git: On branch master ; commit ae26add7ea1724f3281ec8abedb71bcff6a4ae73 ; diff files: CHANGES.md README.md RELEASEnotes.md doc/STARmanual.pdf extras/doc-latex/STARmanual.tex extras/doc-latex/convertParDefToLatexTable.awk extras/doc-latex/parametersDefault.tex extras/docker/Dockerfile source/VERSION 
##### Command Line:
STAR --genomeDir /media/asangani2/genome/HG38/STAR runThreadN 6 readFilesIn data/C3_R1.fastq.gz data/C3_R2.fastq.gz outFileNamePrefix analysis/C3/star
##### Initial USER parameters from Command Line:
###### All USER parameters from Command Line:
genomeDir                     /media/asangani2/genome/HG38/STAR     ~RE-DEFINED
##### Finished reading parameters from all sources

##### Final user re-defined parameters-----------------:
genomeDir                         /media/asangani2/genome/HG38/STAR

-------------------------------
##### Final effective command line:
STAR   --genomeDir /media/asangani2/genome/HG38/STAR
----------------------------------------

Number of fastq files for each mate = 1

EXITING because of fatal input ERROR: could not open readFilesIn=Read1

Nov 09 11:15:38 ...... FATAL ERROR, exiting