2022-11-05 22:26:15.563 [INFO ] - Configuring BaseSpace FileSystem driver
2022-11-05 22:26:16.503 [INFO ] -  Mounting Inputs
2022-11-05 22:26:25.864 [INFO ] -  Mounting Genomes
2022-11-05 22:26:25.886 [INFO ] -   Using Genomes from S3
2022-11-05 22:26:34.439 [INFO ] - Preparing to download image
2022-11-05 22:26:34.493 [INFO ] - Downloading application image (attempt 1).
2022-11-05 22:27:08.909 [INFO ] - Finished downloading application image.
2022-11-05 22:27:09.718 [INFO ] - Starting application container (attempt 1).
2022-11-05 22:27:11.421 [INFO ] - Application container is running.
2022-11-05 22:57:53.880 [INFO ] - Application container exited and reported exit code: 0
2022-11-05 22:57:55.876 [INFO ] - Uploading logs to AppSession
2022-11-05 22:57:56.598 [INFO ] - Container log written to https://api.basespace.illumina.com/v1pre3/files/29425174112/content
2022-11-05 22:57:56.618 [INFO ] - Uploading log file 'Logging.zip' to AppSession
2022-11-05 22:57:57.082 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425174114/content
2022-11-05 22:57:57.116 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:57:57.555 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:57:57.582 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:57:58.065 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:57:58.093 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:57:58.590 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:57:58.614 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:57:59.129 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:57:59.156 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:57:59.597 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:57:59.618 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:00.023 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:00.037 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:00.419 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:00.435 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:00.794 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:00.814 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:01.207 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:01.226 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:01.583 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:01.600 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:01.990 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:02.009 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:02.433 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:02.453 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:02.905 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:02.924 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:03.363 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:03.384 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:03.731 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:03.752 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:04.195 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:04.209 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:04.551 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:04.573 [INFO ] - Uploading log file '_metadata.json' to AppSession
2022-11-05 22:58:04.991 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153733/content
2022-11-05 22:58:05.014 [INFO ] - Uploading log file 'RunInfo.xml' to AppSession
2022-11-05 22:58:05.443 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425152721/content
2022-11-05 22:58:05.460 [INFO ] - Uploading log file 'CompletedJobInfo.xml' to AppSession
2022-11-05 22:58:05.935 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425178965/content
2022-11-05 22:58:05.954 [INFO ] - Uploading log file 'SampleSheetUsed.csv' to AppSession
2022-11-05 22:58:06.358 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425146689/content
2022-11-05 22:58:06.379 [INFO ] - Uploading log file 'WorkflowError.txt' to AppSession
2022-11-05 22:58:06.757 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425174133/content
2022-11-05 22:58:06.776 [INFO ] - Uploading log file 'WorkflowLog.txt' to AppSession
2022-11-05 22:58:07.192 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425178969/content
2022-11-05 22:58:07.213 [INFO ] - Uploading log file 'Reports.zip' to AppSession
2022-11-05 22:58:07.819 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425173123/content
2022-11-05 22:58:07.836 [INFO ] - Uploading log file 'AdapterTrimming.txt' to AppSession
2022-11-05 22:58:08.393 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425170227/content
2022-11-05 22:58:08.415 [INFO ] - Uploading log file 'ConversionStats.xml' to AppSession
2022-11-05 22:58:12.670 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425153741/content
2022-11-05 22:58:12.691 [INFO ] - Uploading log file 'DemultiplexingStats.xml' to AppSession
2022-11-05 22:58:13.091 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425177107/content
2022-11-05 22:58:13.104 [INFO ] - Uploading log file 'DemuxSummaryF1L1.txt' to AppSession
2022-11-05 22:58:13.490 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425159401/content
2022-11-05 22:58:13.507 [INFO ] - Uploading log file 'DemuxSummaryF1L2.txt' to AppSession
2022-11-05 22:58:13.952 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425157693/content
2022-11-05 22:58:13.967 [INFO ] - Uploading log file 'DemuxSummaryF1L3.txt' to AppSession
2022-11-05 22:58:14.406 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425173138/content
2022-11-05 22:58:14.423 [INFO ] - Uploading log file 'DemuxSummaryF1L4.txt' to AppSession
2022-11-05 22:58:14.859 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425181921/content
2022-11-05 22:58:14.880 [INFO ] - Uploading log file 'FastqSummaryF1L1.txt' to AppSession
2022-11-05 22:58:15.191 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425174155/content
2022-11-05 22:58:15.201 [INFO ] - Uploading log file 'FastqSummaryF1L2.txt' to AppSession
2022-11-05 22:58:15.607 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425173170/content
2022-11-05 22:58:15.624 [INFO ] - Uploading log file 'FastqSummaryF1L3.txt' to AppSession
2022-11-05 22:58:16.108 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425176024/content
2022-11-05 22:58:16.119 [INFO ] - Uploading log file 'FastqSummaryF1L4.txt' to AppSession
2022-11-05 22:58:16.508 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425176025/content
2022-11-05 22:58:16.526 [INFO ] - Uploading log file 'Stats.json' to AppSession
2022-11-05 22:58:16.894 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425184950/content
2022-11-05 22:58:16.916 [INFO ] - Uploading log file 'IndexMetricsOut.bin' to AppSession
2022-11-05 22:58:17.574 [INFO ] - Log file written to https://api.basespace.illumina.com/v1pre3/files/29425179076/content
2022-11-05 22:58:19.026 [INFO ] - Uploading AppResults
2022-11-05 22:58:19.043 [INFO ] - Finished uploading AppResults
2022-11-05 22:58:19.076 [INFO ] - Uploading Samples
2022-11-05 22:58:19.094 [INFO ] - Uploading samples from project directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@Unindexed Reads
2022-11-05 22:58:19.107 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@Unindexed Reads/Undetermined from 221104_NB502090_0144_AHCK5MBGXN
2022-11-05 22:59:03.176 [INFO ] - Uploading samples from project directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22
2022-11-05 22:59:03.197 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/AB1
2022-11-05 23:00:11.493 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/AB2
2022-11-05 23:01:09.392 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/AB3
2022-11-05 23:02:21.334 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/AB4
2022-11-05 23:03:08.133 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/C1
2022-11-05 23:03:37.374 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/C2
2022-11-05 23:04:12.135 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/C3
2022-11-05 23:04:42.400 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/FL1
2022-11-05 23:05:24.599 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/FL2
2022-11-05 23:06:35.272 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/FL3
2022-11-05 23:07:19.075 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/FL4
2022-11-05 23:08:22.892 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/PR1
2022-11-05 23:08:52.622 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/PR2
2022-11-05 23:09:17.370 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/PR3
2022-11-05 23:09:45.121 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/STARV1
2022-11-05 23:10:14.344 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/STARV2
2022-11-05 23:10:43.073 [INFO ] - Uploading samples from sample directory /media/ebs/agentdata/use1-prod_626289665_8e34275f2824482fa805ffe899fdee02/data/output/samples/@WellenLab11.4.22/STARV3