#!/bin/bash

# cd /home/malhusayan/workdir/NGSWEB/ucsc/trackhubs/Asangani_Lab/CUTANA/Reyaz/PP2A/hg19

for line in /media/WORK2/Collab/Wei_Tong/pre-analysis/ChIP-Seq/* ; do
    name=`basename $line`
    ln -sf $line/BIGWIG/Aligned.out.primary.rmdup.sorted.bw /home/malhusayan/workdir/NGSWEB/ucsc/trackhubs/Collab/Wei_Tong/ChIP-Seq/hg19/${name}.bw
done

# for file in /home/malhusayan/workdir/NGSWEB/Asangani-Lab/CUTANA/Shweta/alignment-and-assembly1/*; do
#     name=`basename $file`
#     ln -sf /media/WORK1/CUTANA/Shweta/alignment-and-assembly1/${name}/peakcalling/seacr/*.spikein_normalized.bw /home/malhusayan/workdir/NGSWEB/ucsc/trackhubs/Asangani_Lab/CUTANA/Shweta/NSD2/hg38/${name}.bw
# done