INFO  @ Mon, 22 Oct 2018 11:21:02: 
# Command line: callpeak -t ././SRR5345699/STAR/Aligned.out.rmdup.sorted.bam --outdir ././SRR5345699/MACS2
# ARGUMENTS LIST:
# name = NA
# format = AUTO
# ChIP-seq file = ['././SRR5345699/STAR/Aligned.out.rmdup.sorted.bam']
# control file = None
# effective genome size = 2.70e+09
# band width = 300
# model fold = [5, 50]
# qvalue cutoff = 5.00e-02
# Larger dataset will be scaled towards smaller dataset.
# Range for calculating regional lambda is: 10000 bps
# Broad region calling is off
# Paired-End mode is off
 
INFO  @ Mon, 22 Oct 2018 11:21:02: #1 read tag files... 
INFO  @ Mon, 22 Oct 2018 11:21:02: #1 read treatment tags... 
INFO  @ Mon, 22 Oct 2018 11:21:02: Detected format is: BAM 
INFO  @ Mon, 22 Oct 2018 11:21:02: * Input file is gzipped. 
INFO  @ Mon, 22 Oct 2018 11:21:05:  1000000 
INFO  @ Mon, 22 Oct 2018 11:21:09:  2000000 
INFO  @ Mon, 22 Oct 2018 11:21:12:  3000000 
INFO  @ Mon, 22 Oct 2018 11:21:15:  4000000 
INFO  @ Mon, 22 Oct 2018 11:21:18:  5000000 
INFO  @ Mon, 22 Oct 2018 11:21:21:  6000000 
INFO  @ Mon, 22 Oct 2018 11:21:24:  7000000 
INFO  @ Mon, 22 Oct 2018 11:21:27:  8000000 
INFO  @ Mon, 22 Oct 2018 11:21:30:  9000000 
INFO  @ Mon, 22 Oct 2018 11:21:34:  10000000 
INFO  @ Mon, 22 Oct 2018 11:21:37:  11000000 
INFO  @ Mon, 22 Oct 2018 11:21:40:  12000000 
INFO  @ Mon, 22 Oct 2018 11:21:43:  13000000 
INFO  @ Mon, 22 Oct 2018 11:21:46:  14000000 
INFO  @ Mon, 22 Oct 2018 11:21:49:  15000000 
INFO  @ Mon, 22 Oct 2018 11:21:52:  16000000 
INFO  @ Mon, 22 Oct 2018 11:21:55:  17000000 
INFO  @ Mon, 22 Oct 2018 11:21:58:  18000000 
INFO  @ Mon, 22 Oct 2018 11:22:01:  19000000 
INFO  @ Mon, 22 Oct 2018 11:22:04:  20000000 
INFO  @ Mon, 22 Oct 2018 11:22:07:  21000000 
INFO  @ Mon, 22 Oct 2018 11:22:10:  22000000 
INFO  @ Mon, 22 Oct 2018 11:22:13:  23000000 
INFO  @ Mon, 22 Oct 2018 11:22:16:  24000000 
INFO  @ Mon, 22 Oct 2018 11:22:19:  25000000 
INFO  @ Mon, 22 Oct 2018 11:22:22:  26000000 
INFO  @ Mon, 22 Oct 2018 11:22:25:  27000000 
INFO  @ Mon, 22 Oct 2018 11:22:28:  28000000 
INFO  @ Mon, 22 Oct 2018 11:22:31:  29000000 
INFO  @ Mon, 22 Oct 2018 11:22:34:  30000000 
INFO  @ Mon, 22 Oct 2018 11:22:37:  31000000 
INFO  @ Mon, 22 Oct 2018 11:22:40:  32000000 
INFO  @ Mon, 22 Oct 2018 11:22:43:  33000000 
INFO  @ Mon, 22 Oct 2018 11:22:46:  34000000 
INFO  @ Mon, 22 Oct 2018 11:22:49:  35000000 
INFO  @ Mon, 22 Oct 2018 11:22:52:  36000000 
INFO  @ Mon, 22 Oct 2018 11:22:55:  37000000 
INFO  @ Mon, 22 Oct 2018 11:22:57:  38000000 
INFO  @ Mon, 22 Oct 2018 11:22:58: #1 tag size is determined as 51 bps 
INFO  @ Mon, 22 Oct 2018 11:22:58: #1 tag size = 51 
INFO  @ Mon, 22 Oct 2018 11:22:58: #1  total tags in treatment: 33634612 
INFO  @ Mon, 22 Oct 2018 11:22:58: #1 user defined the maximum tags... 
INFO  @ Mon, 22 Oct 2018 11:22:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) 
INFO  @ Mon, 22 Oct 2018 11:22:59: #1  tags after filtering in treatment: 31322788 
INFO  @ Mon, 22 Oct 2018 11:22:59: #1  Redundant rate of treatment: 0.07 
INFO  @ Mon, 22 Oct 2018 11:22:59: #1 finished! 
INFO  @ Mon, 22 Oct 2018 11:22:59: #2 Build Peak Model... 
INFO  @ Mon, 22 Oct 2018 11:22:59: #2 looking for paired plus/minus strand peaks... 
INFO  @ Mon, 22 Oct 2018 11:23:04: #2 number of paired peaks: 137118 
INFO  @ Mon, 22 Oct 2018 11:23:04: start model_add_line... 
INFO  @ Mon, 22 Oct 2018 11:23:04: start X-correlation... 
INFO  @ Mon, 22 Oct 2018 11:23:05: end of X-cor 
INFO  @ Mon, 22 Oct 2018 11:23:05: #2 finished! 
INFO  @ Mon, 22 Oct 2018 11:23:05: #2 predicted fragment length is 239 bps 
INFO  @ Mon, 22 Oct 2018 11:23:05: #2 alternative fragment length(s) may be 239 bps 
INFO  @ Mon, 22 Oct 2018 11:23:05: #2.2 Generate R script for model : ././SRR5345699/MACS2/NA_model.r 
INFO  @ Mon, 22 Oct 2018 11:23:05: #3 Call peaks... 
INFO  @ Mon, 22 Oct 2018 11:23:05: #3 Pre-compute pvalue-qvalue table... 
INFO  @ Mon, 22 Oct 2018 11:24:00: #3 Call peaks for each chromosome... 
INFO  @ Mon, 22 Oct 2018 11:24:47: #4 Write output xls file... ././SRR5345699/MACS2/NA_peaks.xls 
INFO  @ Mon, 22 Oct 2018 11:24:47: #4 Write peak in narrowPeak format file... ././SRR5345699/MACS2/NA_peaks.narrowPeak 
INFO  @ Mon, 22 Oct 2018 11:24:47: #4 Write summits bed file... ././SRR5345699/MACS2/NA_summits.bed 
INFO  @ Mon, 22 Oct 2018 11:24:48: Done!