Mon Oct 22 11:24:48 EDT 2018 ; Analyzing system ./SRR5345700
Forward sequence file has been detected. Running analysis in single_end mode 
mkdir: created directory '././SRR5345700/QC-LOG'
Mon Oct 22 11:24:48 EDT 2018 ; a. ---> Check read quality using FASTQC: results are stored to ././SRR5345700/QC-LOG
Mon Oct 22 11:24:48 EDT 2018 ;    FASTQC logs are written to ././SRR5345700/QC-LOG/Log.out
Mon Oct 22 11:24:48 EDT 2018 ;    QC using fastqc
Mon Oct 22 11:26:17 EDT 2018 ;    Completed QC Analysis
 
 
mkdir: created directory '././SRR5345700/STAR'
Mon Oct 22 11:26:17 EDT 2018 ; b. ---> Running STAR aligner 
Mon Oct 22 11:26:17 EDT 2018 ;  STAR logs are written to ././SRR5345700/STAR/Log.out
Mon Oct 22 11:36:12 EDT 2018 ;   Completed STAR alignment
 
 
Mon Oct 22 11:36:12 EDT 2018 ; c1. ---> Generating index file for STAR aligned and sorted BAM file
 
Mon Oct 22 11:36:47 EDT 2018 ; c2. ---> Removing PCR duplicates
Mon Oct 22 11:42:52 EDT 2018 ; c3. ---> Sorting PCR duplicate free BAM
Mon Oct 22 11:50:33 EDT 2018 ; c4. ---> Generating Index for PCR duplicate free sorted BAM
Mon Oct 22 11:51:04 EDT 2018 ;   Completed BAM file generation
 
 
Mon Oct 22 11:51:04 EDT 2018 ; d. ---> Convering to BAM to bigwig
mkdir: created directory '././SRR5345700/BIGWIG'
Mon Oct 22 12:05:18 EDT 2018 ;   Completed conversion to bigwig
 
 
mkdir: created directory '././SRR5345700/BAMQC'
Mon Oct 22 12:11:26 EDT 2018 ;   Completed BAMQC
 
 
mkdir: created directory '././SRR5345700/HOMER'
Mon Oct 22 12:15:32 EDT 2018 ;   Completed HOMER calculations
 
 
mkdir: created directory '././SRR5345700/MACS2'
Mon Oct 22 12:18:54 EDT 2018 ; completed analysis for system : ./SRR5345700